EGYPT_wtdbg2 EGYPT_falcon AK1 YORUBA GRCh38
Total length 2,750,777,765 2,898,884,838 2,904,077,287 3,088,420,733 3,088,286,401
Total length excl. N 2,750,777,765 2,892,818,931 2,866,737,808 2,866,672,131 2,934,877,342
Masked base pairs 1,345,528,211 1,435,575,726 1,413,775,932 1,410,227,668 1,460,261,213
Masked percent 48.91 49.52 48.68 45.66 47.28
Total interspersed repeats (length) 1,270,497,353 1,320,336,776 1,314,138,374 1,317,435,831 1,338,575,415
Total interspersed repeats [%] 46.19 45.55 45.25 42.66 43.34
SINEs [#] 1,530,292 1,589,908 1,583,241 1,587,036 1,605,431
SINEs [length] 359,608,501 373,693,849 372,170,475 373,046,666 377,820,640
SINEs [%] 13.07 12.89 12.82 12.08 12.23
   ALUs[#] 1,079,892 1,126,166 1,120,007 1,122,789 1,137,550
   ALUs [length] 290,753,986 302,852,234 301,402,853 302,104,277 306,343,851
   ALUs [%] 10.57 10.45 10.38 9.78 9.92
   MIRs [#] 444,937 458,154 457,645 458,671 462,228
   MIRs  [length] 68,157,082 70,129,381 70,054,825 70,231,039 70,757,066
   MIRs [%] 2.48 2.42 2.41 2.27 2.29
LINEs [#] 841,937 873,277 871,049 873,208 884,361
LINEs  [length] 569,573,988 590,944,530 588,248,223 590,362,775 599,897,263
LINEs [%] 20.71 20.39 20.26 19.12 19.42
   LINE1 [#] 495,842 516,783 514,423 515,866 524,101
   LINE1  [length] 472,624,704 491,124,372 488,381,352 490,235,508 498,972,042
   LINE1 [%] 17.18 16.94 16.82 15.87 16.16
   LINE2 [#] 299,787 308,877 308,983 309,617 312,199
   LINE2  [length] 85,819,838 88,397,016 88,421,246 88,667,680 89,364,976
   LINE2 [%] 3.12 3.05 3.04 2.87 2.89
   L3/CR1 [ #] 35,085 36,070 36,099 36,165 36,448
   L3/CR1 [length] 8,258,115 8,484,090 8,486,831 8,498,529 8,588,369
   L3/CR1 [%] 0.3 0.29 0.29 0.28 0.28
LTR elements [#] 457,537 475,472 473,484 474,597 481,782
LTR elements  [length] 242,789,376 253,258,182 251,414,810 251,388,407 257,337,355
LTR elements [%] 8.83 8.74 8.66 8.14 8.33
   ERVL [#] 99,819 103,469 103,245 103,628 104,791
   ERVL  [length] 51,974,726 53,829,622 53,705,403 53,924,871 54,603,661
   ERVL [%] 1.89 1.86 1.85 1.75 1.77
   ERVL-MaLRs [#] 228,735 237,048 236,365 237,408 239,976
   ERVL-MaLRs [length] 100,078,248 103,826,446 103,477,444 104,079,375 105,297,245
   ERVL-MaLRs [%] 3.64 3.58 3.56 3.37 3.41
   ERV_classI [#] 102,442 107,458 106,493 106,273 109,133
   ERV_classI [length] 77,465,816 81,621,576 80,484,556 79,840,029 83,121,374
   ERV_classI [%] 2.82 2.82 2.77 2.59 2.69
   ERV_classII [#] 7,037 7,481 7,294 7,236 7,637
   ERV_classII  [length] 8,080,276 8,652,422 8,400,896 8,207,854 8,915,669
   ERV_classII [%] 0.29 0.3 0.29 0.27 0.29
DNA elements [#] 370,865 382,352 381,939 383,152 386,883
DNA elements  [length] 94,273,194 97,228,990 97,155,191 97,479,332 98,368,979
DNA elements [%] 3.43 3.35 3.35 3.16 3.19
   hAT-Chalie [#] 193,218 199,499 198,979 199,709 201,703
   hAT-Chalie [length] 40,625,077 41,917,825 41,857,100 41,977,682 42,365,680
   hAT-Chalie [%] 1.48 1.45 1.44 1.36 1.37
   TcMar-Tigger [#] 85,755 88,529 88,452 88,740 89,690
   TcMar-Tigger [length] 33,806,800 34,942,810 34,901,041 35,061,870 35,382,060
   TcMar-Tigger [%] 1.23 1.21 1.2 1.14 1.15
Unclassified [#] 8,181 8,663 8,553 8,569 8,636
Unclassified  [length] 4,252,294 5,211,225 5,149,675 5,158,651 5,151,178
Unclassified [%] 0.15 0.18 0.18 0.17 0.17
Small RNA [#] 11,137 11,780 11,628 11,733 11,922
Small RNA  [length] 1,203,286 1,284,763 1,259,739 1,281,567 1,303,930
Small RNA [%] 0.04 0.04 0.04 0.04 0.04
Sattelites [#] 14,510 18,186 14,683 14,548 8,718
Sattelites  [length] 30,068,792 60,014,728 50,963,461 41,277,989 77,106,733
Sattelites [%] 1.09 2.07 1.75 1.34 2.5
Simple repeats [#] 664,236 692,826 683,635 689,781 692,932
Simple repeats  [length] 38,191,382 47,711,603 41,311,765 44,072,961 37,197,789
Simple repeats [%] 1.39 1.65 1.42 1.43 1.2
Low complexity [#] 99,138 102,143 101,370 101,368 102,660
Low complexity  [length] 5,749,261 6,412,758 6,287,764 6,345,498 6,261,605
Low complexity [%] 0.21 0.22 0.22 0.21 0.2